Wednesday, June 26, 2013

Push, pull and grin

After nearly a six year hiatus I hit the weights. And I found myself as my own client. "Slow, and with purpose."  "Concentrate on every millimeter of movement." "Push/pull equally; don't get sloppy."

As a personal trainer with a background in physiology and kinesiology, most of my clients were older or with 'special needs' (post-physical therapy, athletes, etc). I provided instruction, demonstration, supervision, education, and discipline. Although I was a powerlifter, I did not train my clients as one, except for one client that was also a competitive powerlifter. Each person is different and requires their own tailored program. Now I am my own client; older and with special needs.

With an accumulation of broken bones (both ankles and pelvis), permanently dislocated collar bone, herniated disks, arthritis, old sprains, and muscle loss, my younger trainer self stands in front of me reminding me how to move with purpose and concentration, with focus, and with cues. "Place finger on your left abdominal muscles to feel recruitment." ( a form of biofeedback) "Push evenly with both legs, slower on the descent, concentrate on that left quad." (Old nerve impingement) "Arms and hands level with shoulders and keep those shoulders back against that pad!" (Avoid pronation of shoulders) "Yes, ma'am'" I found myself saying. 

I can feel the stress and stimulation in my muscles and joints. 'Remember this, you tissues?' I can also feel increased circulation in my low back joints. The chronic pain has been subdued. But I know what is coming tomorrow: DOMS (delayed-onset muscle soreness). And I'll do a light whole body set, stretch to reduce the soreness (repeated bout effect). And repeat in days to come. I'm on a roll, one I should never have stopped.

It feels good to be home inside me again.

Sunday, June 09, 2013

Bears in wolf clothing

Reported in May 23' 2013' issue of Nature journal:
Hot topic, scalding hot, is the observed decrease in elk population in Yellowstone Nation Park. "It's those damned wolves!!!" Wolves, the ancient scapegoat for everything. Let's look underneath the wolf clothing.

In an attempt to 'reclaim' the trout population in the park lakes, 'humans' (clarification of which humans are not mentioned in the report) restocked the lakes with lake trout. Instead of the native trout. A detail missing from the original ecological assessment was that the lake trout spawn on the bottom of the lakes, unlike the natives, which do not. The introduced non-native fish are unable to be harvested by grizzly bears. Since fish are a major dietary source for grizzlies, the bears look for alternative food sources. Elk calves.

A research team in Wyoming estimated that this dietary shift accounts for as much as 11 percent reduction in the elk population, even elk that winter outside the park. "The decline of these elk is often blamed, perhaps erroneously, on the reintroduction of wolves."

But we do so love our scapegoats, don't we?

Wednesday, March 27, 2013

Which came first: obese chicken or its obese microflora?

Which came first: The obese chicken or its obese microbiota? « Nothing in Biology Makes Sense!

Good summary of a recently published paper on how our gut microflora influences metabolism of the entire organism. Most people tend to think of the gut simply as a container to periodically fill and empty. Only until recent years has science demonstrated that our gut is an organ actively involved in our entire physiology, including communication with the brain and immune system. In fact, just as our body fat is an endocrine organ, the gut is also involved in our endocrine system, including inflammation.

While we consciously or subconsciously interact with thousands of environment components on a daily basis, our gut contains another environment, the microflora, which interacts in ways we are unaware of. Part of that is comprised of what we swallow, sometimes microbes that hitch a ride on food we eat or drink. But that is why we have such a complex environment inside our gut. Hordes of 'good' bacteria often battle with 'bad' bacteria, and sometimes the latter may win. We usually become aware of those battle victories. Others are minor skirmishes that go unnoticed.

It is the chronic battles that alert the big army of our defenses, the immune system. And when the balance is continually upset, the rest of the body responds and other systems may malfunction.

Although epidemiological studies have suggested that some enteric bacteria are associated with obesity and chronic inflammation, the authors of this study demonstrated that a specific bacteria strain causes obesity. (Remember that association is not proof of causation.) However, a limitation of this study is the model: gnotobiotic (aka germ-free) mice. Regardless, it is a logical progression from in vitro models to study interactions of the gut microflora and metabolism. But we have more work to do on this.

My comments submitted on the website's post:
Gnotobiotic studies have their limitations despite that they are a logical progression from in vitro studies and isolate otherwise complex immune and intestinal interactions. Gnotobiotic animals typically have immune systems and intestinal walls that are under-developed. Also, all the food must be antigen free, which is difficult to achieve. Often, secondary infections can rapidly kill off an entire gnotobiotic colony or mask effects of controlled dietary variables. In our experience with gnotobiotic pigs (which are more relevant to human nutrition and gut microflora), administered probiotics had no effect on morbidity when challenged by a single-strain pathogen, whereas pigs in conventional state (non-gnotobiotic conditions) fared significantly better. Animals in a germ-free environment do not fully represent their counterparts in a conventional environment, and variables in studies with gnotobiotic animals must be strictly controlled (and are very expensive).

I found it interesting that in neither the paper or the supplementary information was provided the specific ingredients of the ‘WTP’ diet except for the major nutrient composition. ‘Chinese medicinal medicine’? ‘Prebiotics’? As a reviewer, I would have requested this information be more specific.

Wednesday, February 27, 2013

Academic Assholiness

"As we talked we started to wonder: do you get further in academia if you are a jerk?"

A recent blog post, Academic assholes and the circle of niceness, on the Thesis Whisperer examines the increasing trend of academic snobbery, arrogance, and, aptly termed, 'assholiness'.

Some people ask me why I retired early from academia. Depending on the inquirer, my responses range from "It was just time to do so," to a rant on the trend of academic assholiness.

During the last nine years at a large self-inflated university that trend has increased, and, in fact, has been selected for, intentionally or not. After being recruited for a research position there, I was genuinely excited and passionate about my work. Over the next nine years of experience and observations in two departments, that dwindled to waking up every weekday morning and forcing myself to go through the motions. The last two years were simply a job while I prepared to walk away from the Academic Empire.

This is not the only university in which I have observed and experienced Academic Assholiness. Nor have I been close-mouthed about specific examples like many others that endure it and trudge on. My grievances were nodded at, checked off and ignored. I watched with anger as a research lab manager fought for her job with a lawsuit because a department head covertly attempted to have her fired. In this case, it was a prompted by an illness resulting from unhealthy environmental conditions in the department. This was an ongoing complaint by several staff and researchers over several years, but was repeatedly ignored.

Another example was a research scientist that continuously discriminated against gender and race of staff and graduate students in his laboratory. Grievances related to this individual were overtly ignored. Additionally, an academic scientist nearly destroyed the career of a young and brilliant scientist because of a personal dislike for her national affiliation and origin. And another scientist who intentionally recruited foreign graduate students to demand unreasonably long working hours, even threatening their educational and visa status if they complained. Then there's the junior scientist who feels that unrelenting humiliation of graduate and undergraduate students during their seminars or presentations elevates his own academic standing. And, lastly, the arrogant yelling at janitorial and service staff as if they were kicking a dog, or, mostly, their prevalent treatment of them as the Invisibles and Untouchables.

Finally, there is the Nobel Prize researchers recruited and installed in university departments at the expense -their research space and equipment- of other well-established and equally successful (without the NP recognition) academics, and whose snobbery and academic arrogance is overlooked and even smiled upon by university administration.

These are members of the increasing species of Academia assholiata that I see rapidly evolving in our social environment. I could continue with examples from 28 years in academic halls and three universities. Only one of these institutions, a small university, had a credible and effective process for grievances. The other two institutions had sham committees. Speaking openly meant being blacklisted. In the past four years I have seen too many young and bright scientists leave academia, and am now seeing a flood of older scientists flee, some jaded and bitter.I left last year without looking back.

I am heartened and pleased to see more public discourse like this post on these issues, and I encourage others in all levels of academia to be more outspoken.

Saturday, February 09, 2013

KcD Studios: senior thesis

KcD Studios: senior thesis

 A brilliant idea and wonderful artistic imaginative renditions. A great idea to incorporate into teaching chemistry!

Visit Kacie's website and blog to see more artistic renditions of the periodic elements.


Sunday, December 23, 2012

Treat obesity as physiology, not physics : Nature News & Comment

I find it sadly amusing that we still strive to reduce the obesity/diabetes problem down to one cause. As if reality and the world were binary: either/or. Instead of a very complex and dynamic network of factors involved with obesity and associated diseases. Until a human being is viewed holistically as a dynamic organism that responds to its intrinsic and extrinsic environment, and that the process to a state of obesity and diabetes is multifactorial, we will continue to blunder along as if blindfolded.


Treat obesity as physiology, not physics : Nature News & Comment

Friday, November 11, 2011

Precious Proteins

There I was; leading a small team of scientists to save these precious proteins for the world. For the future. Ice cream proteins. We had two of these rare proteins that expressed smooth, creamy, flavorful ice cream. And recovered another from an evil group of industrial men. It had been stolen from a collaborator; this one expressed rich butterscotch ice cream.

I had hidden these proteins in a house. But as the private industry group of men were surrounding us, I distributed the three precious proteins to three individuals in our small group (one looked like Albert Einstein). And told them to run. Run, hide; don't let ourselves, and the proteins be caught. Faint, punt, divert those bad men away from each of us. Don't listen to their pleas and lies.

We must preserve and keep these proteins safe. Safe for all to access in the future. Without modifications, without capitalization; free for all mankind. 'Run, and protect them with your lives.' For these are the keys to the Perfect Ice Cream. RUN!!!!

Then there was a small party outside, a gathering of friends to share food and music. Graeme playing guitar (I didn't think he had a music bone in his body), a girl with short blond hair and fine voice, and I thank John and Tracy for coming all the way from Indiana to play bass and share in the celebration. Of ice cream.

Full moon triggers wild and vivid dreams at night.

Tuesday, October 04, 2011

To mouse, or not to mouse. What is the question?

After many years in medical and veterinary biology and pathology, I always questioned the (rather blind) reliance on the mouse model by modern science. I was glad to see I am not the only one.
Sometimes, there is a 800-pound silverback gorilla in the room and he is 'invisible'. This article exposes the gorilla and shows that the problem animal is not the gorilla but in fact a big fat rodent! An often overlooked aspect of research studies using rodents is that these animals tend to be sedentary, mentally stagnant and overfed. This life style results in obesity and a range of consequent pathologies, including cardiovascular disease, cancer, diabetes, accelerated neurodegeneration and renal failure. This article details the fact that animals in such an unhealthy state do not qualify as appropriate research models for anything other than the study of 'couch potatoes'. 
This is a major wake-up call for the research community and easily addressed by portioned feeding of laboratory rodents and by putting a running wheel in their cages.
Citation: Shelley C, Marshansky V: "Sometimes, there is a 800-pound silverback gorilla in the room and he is..."  Evaluation of: [Martin B et al. "Control" laboratory rodents are metabolically morbid: why it matters. Proc Natl Acad Sci U S A. 2010 Apr 6; 107(14):6127-33
doi: 10.1073/pnas.0912955107]. 
Faculty of 1000, 22 Jul 2010. F1000.com/3078978

Tuesday, June 21, 2011

Climate Changes: Interactive River Flow Map

Climate change cometh. This year (so far) has been one of extreme weather nationwide. Rivers are either flooding or drying up (exemplified here in Texas). The interactive map below is borrowed from Climate Central, a website with reliable information on global climate changes.


Word for Today: June 21, 2011.

Word for Today: thingification. The consideration of an abstraction or an object as if it had living existence and abilities; objectivication in social relations; modern Cartesian science. Reification.

Friday, May 20, 2011

Domestication Experiment with Silver Fox

I've known about Dr. Belyaev's experiment for many years, but this is the first (current) video of the foxes.


The incredible fox domestication experiment in Novosibirsk, Russia from Tyler Cole on Vimeo.

You can read more about Cole's visit to Russia and the Institute by following this link.

An article about domestication of animals, in which the Novosibirsk foxes were featured, appeared in a recent issue National Geographic.

Saturday, April 16, 2011

The Zeitgeist Movement

I have no words that can express the relevance and importance of this movie and it's content.

Thursday, February 17, 2011

Are we there now?

In The Demon-Haunted World, Carl Sagan wrote:

Science is more than a body of knowledge; it is a way of thinking. I have a foreboding of an America in my children's or grandchildren's time -- when the United States is a service and information economy; when nearly all the key manufacturing industries have slipped away to other countries; when awesome technological powers are in the hands of a very few, and no one representing the public interest can even grasp the issues; when the people have lost the ability to set their own agendas or knowledgeably question those in authority; when, clutching our crystals and nervously consulting our horoscopes, our critical faculties in decline, unable to distinguish between what feels good and what's true, we slide, almost without noticing, back into superstition and darkness.

Wednesday, February 09, 2011

Pronghorn Declines in Texas

The Pronghorn is one of the iconic mammals of the West in North America. Often referred to as 'antelope,' Antilocapra americana is the sole survivor of twelve species that roamed the North American continent before one of the Great Extinctions (Pleistocene) 10,000-12,000 years ago. (Unlike the pronghorn, true antelopes are a member of the cattle family and are not native to North America. Pronghorns have forked horns; antelopes have unforked horns.) Early observations recounted pronghorns covering the grassy plains. Their traditional range was documented reaching from south-central Canada down into Texas and northern Mexico, and west to Baja, California.

Observations of declines in pronghorn populations were noted in the early 1900's; hunting pressure reduced their population to 13,000 in the 1920's. Disease, especially Blue Tongue, also contributed to reductions. Luckily, conservation efforts helped to restore populations: 500,000 to 1,000,000 across the continent. However, local populations that rebounded have recently declined again. West Texas is one of those areas.

Similar to nationwide trends, overall declines in Texas have paralleled loss of habitat. Only two regions now support pronghorns: the Panhandle and Trans-Pecos areas. The latter has declined faster over the last 150 years, and has recently accelerated. Population fluctuations usually follow changes in water and forage availability, so decreases during years of drought are not surprising. Herds typically rebound by improved reproduction and survival with more favorable weather and food availability, as they did after the drought of the 1990's. However, population estimates of pronghorns in the Trans-Pecos region have continued to decline despite more favorable forage availability during the last three years. In fact, these populations are the lowest since the 1970's. The question is: why?

In 2007, state parks and wildlife officials, hunters, and landowners that profit from hunting licenses began to sit up and take notice of pronghorn populations. Based on preliminary studies and data collection, two hypotheses predominate: internal parasites and predation. The Borderlands Research Institute (BRI) at Sul Ross State University collected a few hundred samples since 2009. They discovered a high load of a common internal stomach parasite, the roundworm, in both hunter-harvested and regional habitat-dwelling animals. A high parasite burden can cause anemia (low red blood cell count), weakening an animal and increasing susceptibility to disease, predation and other stresses. Reproduction can also be affected contributing to decreases on populations. 

Predation is always the favored target of declining populations involving any mammalian species valued by human economics, especially livestock and hunting-target species. Although predators occupy a practical and valuable niche in mammalian ecosystems, large predators have historically served as an easy scapegoat for unexplained deaths. Regardless, considering the overall increasing urban and rural populations of coyotes, investigation into the role of predation on the Texas pronghorn is valid. Although the adult pronghorn can outrun a coyote and cougar, even a cheetah, fawns are more susceptible to predation.

The recruitment into a herd of pronghorn by growing fawns, called 'fawn recruitment,' is commonly a preferred determinant of populations than mortality of adults. This measure more realistically reflects the reproductive capacity of does as well as predation pressure, since they are the typical target by predators: mostly coyotes, cougars, eagles. The major predator of adult pronghorns is Man. 

A 1948-1977 summary of fawn recruitment rates in Canada and the U.S. varied from 43 (fawns per 100 does) in Texas to highs of 105 in South Dakota. More recent pooled data - 1978-2008 - revealed that despite fluctuations in numbers, fawn recruitment continued to decline in most of the same areas as the previous study. The data also revealed differences in fawn recruitment associated with vegetation communities. An independent study of fawn recruitment and forage availability in Arizona showed an increase in fawn recruitment parallel with forage conditions. Their findings strongly suggested that a diversity of plant species is optimal pronghorn habitat and maintenance of habitat diversity is important. This, along with supporting evidence from other independent studies, demonstrates differences in fawn survival may depend on the diets of adults as well as offspring. 

Despite increases in rainfall over the past three years and subsequent increases in forage availability, an important component may be missing: accessibility. The pronghorn display an unusual behavior apart all other wild ungulates: they are not good jumpers. They are disinclined to jump even a low brush fence over three feet high. Small bands of pronghorn have been known to almost starve within a fenced enclosure while plenty of food is available on the outside. When hardpressed, they can jump over moderately high obstructions, but fences will alter their ranges and access to forage. They have been observed to crawl under or between wires of barbed-wire fences, prompting many conservation cooperatives to remove the bottom wire or replace it with a barbless wire. 

The major factor in determining animal populations across the continent during modern times is habitat changes. Land use patterns, including development, resource extraction, and traffic, have changed not only the topographical features but also water and food availability and accessibility. Entire ecosystems are changing. As habitats shrink, many species are competing for the same food and water resources. Migration routes are cut off or severely restricted across the country. Along with habitat changes are subsequent down-stream pressures: increased density of animals and parasite loads, disease exposure, local vegetation exhaustion, decreased vegetation to hide from predators, traffic mortality increases, reductions in reproduction and subsequent offspring survival. Whether these factors have been taken into account in Texas pronghorn performance and survivability is unknown.

Last September the Texas Parks and Wildlife Department (TPWD) awarded a 3 year $111,210 grant to the BRI at Sul Ross State University in Alpine, TX. Their research aims to evaluate the two competing hypotheses described above, regarding pronghorn survival and productivity in the Trans-Pecos area. Meanwhile, the Trans-Pecos Pronghorn Working Group, a group of West Texas landowners, outfitters, TPWD biologists, BRI personnel and wildlife veterinarians, decided to transfer several hundred pronghorn adults from the Texas Panhandle area to West Texas. My objection to this move is that moving healthy animals to locations where populations are inexplicably and rapidly declining is premature and possibly deleterious to the health of the transplanted animals.

Because the decline of the Panhandle pronghorn population appears to be less than that in the Trans-Pecos area, I hope that those involved in this move have considered using the Panhandle population, and others living in similar habitats as those in the Trans-Pecos region, as controls. I also hope that those involved in this research expand their consideration of factors that govern population performance, including population displacement and decline. Rather than address the Trans-Pecos problem from a 'Band-aid' approach, and jeopardizing the lives of transplanted animals at the expense of another population, a thoroughly planned investigation based on scientific principles should precede premature and possibly detrimental short-term fixes.

Other regions have and continue to study and address pronghorn population declines. Several organizations -local, state and federal- are cooperatively working to facilitate habitat preservation. Even migration corridors are being preserved and maintained in several states, such as Montana and southern Canada. Many ranches in Oregon and Arizona are removing unnecessary fence lines and installing barbless wire, especially on bottom lines. Natural gas companies in Wyoming are cooperatively working with organizations to alter gas pads and traffic in order to preserve migration corridors and habitat. Underpasses are being constructed across major highways to divert migration routes away from fences and traffic. Ranches in the upper Great Plains are cooperatively restoring overgrazed ranges for pronghorn forage.

Maybe it is time for Texas to rejoin the Union to help explore and solve its problems. At the very least, they can expand their considerations from a few trees and to the entire forest. Animal populations exist in an interconnected community and system, and problems should be considering holistically. Let's all focus on finding answers to the questions and then examining long-term solutions. 

Pronghorn benefit a huge success; release set for late February


Thursday, February 03, 2011

Climate Change Cometh

Loosely following the debate, discourse and arguments surrounding climate change, sometimes I just have to look away. Like watching a bad wreck. A very complex subject, where there are no accurate and reliable models and predictions. The projections fit into a very wide area under the curve and outliers will probably be shifting that range more than not. More than regional, even global, this is a solar system-dependent phenomenon.

Anyone denying climate change during our lifetime is more than ignorant; it is stupidity. I understand that humans do not like change, but to base ignorance in a belief system that climate change is not eminent is truly stupidity. The evidence is not only a well-documented scientific observation, it is an experience at our personal level. The real issues are not if climate change is real, but how much of that change is attributable to anthropogenic causes. 

With any knowledge of geological and geographical history at a middle school level, we know that global and regional climate and weather change. To disbelieve and/or deny that is unacceptable. Supplementing that knowledge with how regional and global climate is influenced by long-term subtle and traumatic events - volcanic explosions, rampant wildfires, asteroid collisions, sunspots, changes in ecosystems, etc - will aid understanding the connections between systems on and above this planet. Now add centuries of human intervention and technological contributions, sometimes rapid, to changes in regional and global-wide systems. To deny anthropogenic impact on our planetary systems is inexcusable.

The question that remains, and which may remain unanswerable, is the degree of human impact. At this point in time, the question may remain moot. The question requiring attention is how we can reduce our impact.

Weather and climate have a long history of cyclic changes, as long as the life of this planet and our solar system. We cannot deny our current climate change. Unfortunately, the politically hot term that is mistakenly embroiled world-wide, 'global warming,' has been misconceived. But the damage is done. Now we must move beyond that and accept that climate change, with possible accompanying extremes of hot and cold weather, is here. We are feeling the impact. Now.

Yet, like little ants, we continue to embroil ourselves in useless arguments and self-serving blame and flame throwing. This gets us nowhere. It's time to discard the disbelief, bottle the self-serving useless tirades, promote more accurate and constructive discourse; it is time to act and prepare ourselves for cooperation and adaptation. Reduce our contributions to climate change and learn to adapt to the global-changing weather patterns as a global community.

I was somewhat encouraged to read on a more-than-useless forum  debate the following intelligent post:
I know many weather and climate factors are the product of non-man based cycles. We cannot stop major long-run Global and Solar cycles, but the sudden changes we are seeing the last 50 years seem to be producing a lot more energy due to how quick the changes are occurring. (aka more instability)

However we do need to recognize that warming is a serious issue -- and one that Man likely cannot stop. But instead of trying to prepare and do what we can to slow it --- We are accelerating it now, and have a whole contingent of Americans that believe we should just ignore it --- which just seems foolish.

Man didn't cause all the European Glaciers to severely melt 4000 years ago. (see what's happened in Africa and the Middle East as all the Glacial-melt-fed Rivers dried up --- It's amazing to try to think of Iraq and Egypt as fertile plains, not dust-bowls.)

So we know climate change is a real threat regardless of Man -- but exacerbating it, certainly seems to be ignorant and foolish, just as much as thinking we can fully control it.
 Let's put aside our ignorance, our self-serving demonstrations, and join as a community to reduce human impact and adapt to the coming changes.

Tuesday, December 07, 2010

When immune systems run amok

"...epidemiologist Thomas Reichert of the Entropy Research Institute in Lincoln, Massachusetts, finds Polack's hypothesis completely plausible. There's not much that could cause this kind of lung damage except an invasion of T lymphocytes (the immune system's "warrior cells"), he says, and Polack found no evidence of that. The immune system's overreaction, says Reichert, is "kind of a last-ditch way of handling something. ... If we can't identify you specifically enough, but we know there's a lot of you, we're just going to blow the whole damn place up."

Friday, August 07, 2009

Crosses

How do I silence
The tugging heart strings
the tickling sadness
the fleeting joy.
How do I quiet
the repressed longing
the remembered images
that play through my head.
How do I mediate
this battle raging inside
when I am both sides of the war.
This lake of unspoken confusion and emotions
damned by martyred morals
and past experience.
All threatening to overflow
with tidal waves.
Crushing you and I below.
Why does this have to be my cross to bear
Again.
I can't speak it
my voice is frozen.

Wednesday, August 01, 2007

Truth and Consequences

The truth that makes men free is for the most part the truth which men prefer not to hear.
- Herbert Agar

Wednesday, March 07, 2007

Loving Warriors We Are

"Some people mistake being loving for being a sap. Quite the contrary, the most loving people are often the most fierce and the most acutely armed for battle... for they care about preserving and protecting poetry, symphonic song, ideas, the elements, creatures, inventions, hopes and dreams, dances and holiness... those goodly endeavors that cannot be allowed to perish from this earth, else humanity itself would perish..."
- Clarissa Pinkola Estés, from The Dangerous Old Woman

Tuesday, January 23, 2007

Relativity is Very Special

I have a love/hate relationship with fysiks (aka physics), that other 'f' word.

I'm a 'conceptual physics lover', 'calculated fysiks hater'. I read 'Physics for Biologists' and the 'Tao of Physics'. But I hated my physics text book.

Physicists are obsessed for finding the 'Theory of Everything'. As if there was 'one' theory for anything. To me, physics is modeling for probabilities. Not to be confused with 'anything is possible.' But probabilities are what reality is made of, each having a different weight. Many theories in physics can be modeled by mathematics but not tested in the 'real world'. Nevertheless, sometimes that's all we have.

I have followed with the interest, curiosity and amusement of a physics novice the rapidly changinng theories of late: string, relativity, origins of the universe (and it's many components), and Farscape. Okay, the latter is more for entertainment.

So now we have physicists challenging Einstien's special theory of relativity with.........
very special theory of relativity [1].

Is it clear in color? Does it require a helmet? I bet it rides a magic bus.

Time for all us Observers to get on our Neutrinos and ride!

[1] Article in New Scientist (Jan. 20, 2007; vol. 193, No. 2587).
Letter by Andrew Cohen in Physical Review Letters (97, 021601; 2006).

Friday, December 29, 2006

Finally......

Eccentricity is not, as dull people would have us believe, a form of madness. It is often a kind of innocent pride, and the man of genius and the aristocrat are frequently regarded as eccentrics because genius and aristocrat are entirely unafraid of and uninfluenced by the opinions and vagaries of the crowd.
- Edith Sitwell

Wednesday, December 13, 2006

I was recently seduced to the Electronic Dark Side and bought an iPod.
Now I have a direct circuit into my brain feeding me not only music
but podcasts (and podbooks, ohmygodno!). I still want a flash drive
for my brain......

I listened to a weekly update from SEED on the train this morning
which included the excerpt below. I know this topic has surfaced
before, so here's the 'latest':

Go In With a Bang
Athletes need energy. They need fire. They need power. They need, um,
spunk. And plenty of athletes hope to build their supply by abstaining
from sex for days, weeks or months before a big sporting event.
According to scientists, however, a little pre-gaming may not be such
a bad thing. Some studies indicate that sex may raise testosterone
levels and therefore actually help performance on the field.[3]

Italian professor of endocrinology Emmanuele A. Jannini says three
months of abstinence can cause testosterone to drop to children's
levels, which is probably none too helpful in maintaining the
aggression needed for boxing or football. Sexual activity also doesn't
leave participants drained of their vigor: A roll in the hay usually
only costs 25 to 50 calories per person [1], fewer than the calories
in a single Oreo cookie.

In women, sex produces a neuropeptide that can block pain for up to a
day, allowing female athletes to play through muscle pain[2]. So start
your warm-ups early, kids. Science knows best.
(source: National Geographic News)

[1] I disaggree with this assertion (energy expenditure per 'roll in
the hay'). I am devilishly curious about the sample pool from which
these data and statistics were derived. Obviously a pool of
conservative elderly........

[2] This reference to a gender dimorphic response is intriguing.
Parallel with my interest in that topic, I will see if I can track
down this information.

[3] A few recent studies coming out of the psychology field suggests
that not just any type of sex may have the same effects. Two recent
studies suggest that coitus induces a more robust physiological and
psychological response than either oral or masturbation. (one measured
ability to cope with acute environmental stress, the other examined a
few select hormones - which they had analyzed a greater selection)
(for quick summary of the latter: Fun with Brains. )


Recent literature also demonstrated that sex can mediate and moderate situational stress response for up to 24 hours after the sex act. That I don't find newsbreaking. We all know that sex raises endorphins and other 'feel good' hormones and neurotransmitters. It even relaxes muscles.

So women who claim to have headaches to abstain from sex can't use that as an excuse anymore. Sex can actually alleviate or dispel headaches.

Wednesday, September 13, 2006

Storms Within

Come
Take me
Cauterize my bleeding heart
Cover my silence with your mouth
My breath is yours
Your taste is mine
As you lose yourself
Inside me.

Close
The gap
The chasm widens deeper
Always reaching
And pulling back
Afraid to give each other
Echoes of yesterday foul
Our todays.

Touching
Not embracing
Fear dictates the tempest
The emptiness inside us
Fleeting whispers
Tentative words
Storms reflected in
our eyes.

Thursday, July 27, 2006

My First Law

A friend suggested I post my Laws. So I shall.

First Law:
Where there's a positive, there is a negative.

Everything operates in systems; everything is a trade-off. My first law parallels one of the most basic laws of nature: the conservation of energy. It cannot be created or destroyed. It simply flows from one system to another in a variety of forms.

As British scientist and author C. P. Snow interprets the First Law of Thermodynamics [1]:
"You cannot win (that is, you cannot get something for nothing, because matter and energy are conserved)."
This of course precludes its sibling, the Second Law of Thermodynamics, addressing the direction of that conservation. Again, in the words of Snow:
"You cannot break even (you cannot return to the same energy state, because there is always an increase in disorder; entropy always increases)."
Natural proccesses that involve energy transfer go in one direction and that process is irreversible. Steven Hawking explains it thusly using time as an example: when time moves in a foward direction and one breaks a cup of coffee on the floor, no matter what happens, in our universe, one will never see the cup reform. Cups are breaking all the time, but never reforming.

Another parallel is Newton's Third Law of Motion: For every action, there is an equal and opposite reaction. Forces always involve interactions and they always come in pairs - equal and opposite action-reaction force pairs. Examples of this law abound in nature: the wings of a bird push air downwards. In turn, the air reacts by pushing the bird upwards.

Thus the Tao of physics, the yin and yang. Yet it is not a simple Descartian duality for which there is an invisible division. Opposites are always in motion, transitioning from one to the other; it is the complementation of natural proccesses.
The natural order requires complementation between the harmonious rule of order and a continuing respect for the fertility of chaos. Order needs to be at all times suppliant and responsive to fertile transition so that new order can emerge from the natural ferment of chaos.
Our reality is a paradoxical complement of our subjective consciousness and the physical universe. That physical universe is itself a paradox of relativity and quantum uncertainty in which the future and the past become lost in probabilities. The description of physical reality is no more and no less than a narrative told about the stabilities and correspondences of our conscious experience.

Thus the philosophy that attempts to understand the fundamental nature of all reality, whether visible or invisible; it seeks a description so basic, so essentially simple, so all-inclusive that it applies to everything: metaphysics.

This is the First Law. It is the Tao.

Quantum physics will always be controversial, it hinges on the metaphysical thus it is almost like trying to describe God.

Know Thine Enemy.....

...and you will know yourself. Are we our worst enemy? We don't have to be.

No, I think we are all bozos on this bus of life [1].
“Imagine a universe in which your feelings, thoughts, and memories are not your enemy. They are your history brought into the current context, and your own history is not your enemy.”
- Steven Hayes, psychologist

[1] Referencing Firesign Theater's last
(1971) 'early' production , I Think We Are All Bozos On This Bus. For the underlying meaning of the reference, visit this website for the CD liner notes, especially those written by Phil Austin.

Thursday, July 06, 2006

Who's Weird?

I never set out to be weird. It was always the other people who called me weird.
-- Frank Zappa, to The Baltimore Sun, October 12, 1986

Monday, June 19, 2006

Darwin's Challenge on Sex and Selection

And a challenge for all of us to think outside our boxes.

Joan Roughgarden, a Stanford University biologist, challenges classical Darwinian sexual selection theory with her book Evolution's Rainbow and paper, "Reproductive social behavior: cooperative games to replace sexual selection," published last February in Science. She and co-authors propose an alternative model based on game theory to replace Darwin's Venus and Mars sexual selection theory. The classic model of men want sex and women want to cuddle pervades our culture and perhaps it dictates our biology and what we are without questioning if it is the only valid model.

But what about the prevalence of 'aberrant' sex? Horny women, bi- and homosexuality, and polygamy.....Oh my!! Unquestionably branded as aberrant sexual behavior in human culture, it is not uncommon in other species. The current issue of SEED lists 450 species, as a matter of fact. Raising various mammalian specimens myself (rats, mice, dogs, cat, sheep, horses, rabbits...) over a lifetime, I questioned the omnipotence of the classical sexual selection model based on observation of these species, including our own.

Roughgarden's paper expectantly caused a disturbance in the arena of biologists with a barrage of rebuttals and letters to the editor (see link below) and elsewhere. While Roughgarden proposes to replace Darwin's classical theory, perhaps expanding upon it would be more productive and reflective of the real world.

In a discussion appearing in SEED of Roughgarden's proposed model and the controversy*, author Jonah Lehrer aptly writes:
"Roughgarden's cataloging of sexual diversity has challenged a fundamental biological theory. If Darwinian sexual selection -whatever its current variant- —is to survive, it must adapt to this new data and come up with convincing explanations for why a host of animals just aren't like peacocks."
Time for all biologists to step outside their box for a moment and consider Roughgarden's points.

* The Gay Animal Kingdom, online article and in the June/July 2006 printed issue.

Abstract for Roughgarden et. al. paper and listing of published rebuttals in Science .

Friday, June 16, 2006

Science Idol: the Scientific Integrity Editorial Cartoon Contest

Here's your chance, all you budding cartoonists!

The Union of Concerned Scientists (UCS) birthed a brainstorm for a contest to speak out. Using satire in the form of cartoons, contestants are invited to take meaningful pot shots at the current US administration's track record on science. Aptly named "Science Idol", contestants can make fun of the administration's attempts at control and distortion of science.

Two categories allow amateur and professional cartoonists to submit their entries which are due by July 31, 2006. Twelve finalists will be selected by celebrity judges and these will be judged by the public for the winners.

For more information on entries and prizes, visit the UCS website.

I hope Gahan Wilson submits an entry.

Sunday, May 28, 2006

Blog cloning

In the spirit of yin and yang, I have two blog sites. Thinking back to little more than a year ago, this activity began reluctantly as an experiment recommended by a friend to help me overcome a bad case of writer's block. Being a freelance writer, such an obstruction can be deleterious to not only supplemental income but the mind. Writing is like singing, painting, dancing, and telling stories: it is a form of expression of the heart and soul. When a writer has writer’s block it is akin to “I have no mouth and I must scream”. *

My problem is I can't type fast enough or access to a medium is unavailable when needed the most. I am waiting for technology to develop a flash drive that can be inserted directly into the brain and to which I can download my thoughts, remove later and upload to my computer. Reading the weekly science and technology news, that may happen soon; I'll be the first to volunteer testing a prototype.

The experiment simultaneously succeeded and backfired. Writer's block is gone and my writing expression has evolved and blossomed. I've published several works since then, even delving into other genres under a pseudonym (don't ask; I'm not telling). Unfortunately deadlines continue to hover over me and I'm just as much a procrastinator as before. The two books I am working on still progress at a snail's pace.

My passion is life, although what you mostly read here in these two blogs are two special passions: science and riding motorcycles. In some ways the two are similar: journeys into the unknown. Both science and riding involve destinations, technology and processes. Yet a component of both many don’t consider is the journey; the journey of discovery. That is an important common denominator and a recurring feature that winds its way in and around these blog posts. (Did the word ‘cloning’ in the title give you a clue?)

Because the motorcycle posts have become more frequent, I decided to devote a new blog site to them: Meanderings on Two Wheels. Over time I will be moving the bike and riding content from the original blog site (Whose Reality is This?) to the newer bike site. I will leave some of the original bike posts where they were originally posted, but not all. As I move them I will post an update in the bike site. Otherwise they will be hidden in the archives. If any code monkeys out there know how I can add a function to a side bar for recently added posts independently from the date, help would be appreciated. Until then, watch for notices of posts moved from this site.

Recently moved:
My Zen of Motorcycle Riding
Walkabout
April's Fool Day

* Short story by the same name by science fiction and commentator Harlan Ellison. Be forewarned if you read this story; it is highly emotive and powerful. It may birth nightmares.

Thursday, May 25, 2006

If I Were Head of State: Due Parte

I would proclaim and enforce a fee of a dime for every vehicle turning and not using their turn signal. I suspect the national deficit would be eliminated in one year.

Friday, May 19, 2006

Snot Rockets

I have of late spent most of my rare time at home mowing the flora on my five acres of Solitude in Central Texas. Thanks to modern technology and Sears, a tractor with a 48" mowing deck is my saviour. Despite my raging torment of unattaching and removing the deck to extract a wayward rope that had entwined itself around the blades, and then putting it all back together, I love my mower. Mowing the property serves as a relaxing activity while I play patterns and games with the terrain, mower heights, tractor speed and the obstacle course that I live on (thorny mesquite bushes, pond, etc). The challenge of mowing a pattern that is as efficient as possible is akin to a chess game. I lose sometimes.

A major obstacle is my allergy to grass pollen. Those tiny misshaped granules that help procreate the many species of grasses wreck havoc on my immune system. The little mast cells that are the soldiers in the first line of defence in the mucus membranes bombard my nose, eyes and skin with histamine, setting off a cascade of mucus production.

"Attack!!!!"

Membrane cells secrete that viscous sticky stuff called 'mucus', chock full of proteoglycans, salts and enzymes that trap and degrade small foreign particles and agents as a protective mechanism. Yet, a hypersensivity to certain allergens such as grass pollen can elicit mucus production like no tomorrow and the nose becomes a running faucet. In that instance, it becomes less of a friendly 'protective' evolutionary function and more a nuisance and downright pain in the nose. It rightly earns the name: 'snot'.

This leads to the question: What does one do when he/she encounters an attack on all fronts by enemy allergens and the battle wages to the point where you can't keep up with the mucus production by snuffling it back up your sinuses?

Well, the old remedy that all outdoorsy people are familiar with: the 'snot rocket'.
Just aim well.

I read the following this morning in my recent issue of New Scientist in the section: The Last Word, where readers submit questions which are answered by other readers. Here it was; the 'snot rocket'.

Is it coincidence a human finger fits exactly into a human nostril. If not, why does my mum tell me not to do it?

Your mother may not approve, but there is a way to clear your nose without sticking anything inside it. It's called the "snot rocket". Just push against the side of one nostril to close it off, take a deep breath, close your mouth and exhale as hard and sharply as you can through your other nostril. You'll be amazed how fast the contents shoot out. Just make sure you tilt your head away from your body to avoid peppering yourself.

Nose-clearing tactics like the snot rocket mean there is no life-or-death reason for the co-evolution of digging digits and large, inviting nostrils. After all, nose blockage is easily managed by breathing through your mouth. In fact, a blocked nose is really only a problem if something gets lodged near your nasal bones, where it is dangerously close to your brain. That is a region where human fingers are too podgy to be of any use. A rather thrilling story of a primatologist, some tweezers and an engorged Ugandan tick comes to mind.

Sexual selection might have favoured the relationship of finger to nostril if, say, females in the Pleistocene preferred mating with males who picked their noses, or if males and females picked each other's noses in a courtship ritual. However, that would be taking reciprocal grooming a little far.

So we must conclude that, yes, it is mere coincidence that your fingers fit so nicely into your nostrils. I doubt the made-for-each-other argument is going to change your mum's opinion of rhinotillexomania. I suggest you demonstrate the snot rocket instead and see what she says.

Holly Dunsworth, State College, Pennsylvania, US

Note: I recall commenting to a close friend once "You know how close and trusting we are when I can pick the buggers from your nose." Better all out of the nose than half out........

...and A View to the Sky

For all you fellow astronomy nerds out there, especially those with telescopes, here's your chance: Comet 73P. In 1995 this comet unexpectantly broke up into at least 58 pieces. Earlier part of this week, many pieces will have passed within 12 million miles of our planet. This is only 30 times as far away as our moon, thus the closest comet within the last 20 years.

A meteor shower is expected to be seen between May 19 and June 19 of this year as Earth passes through the edges of the comet's tail. The largest and brightest fragment (called Fragment C), and thought to be the main bulk of the comet, may be visible to the naked eye in dark skies. Fragment B, the next brightest comet fragment, may require binoculars.

You can read more about the history of and expected passing of Comet 73P's remains at the Comet Chasers website.

Wow, what a treat: a recent full moon and now comets!



Wednesday, May 10, 2006

View From the Table

I am an outlier amongst my own gender.

A bookstore-aholic, I often find solace in the bookstores amongst the book and magazine racks and the cafes. Once inside, like a lion scoping its prey, my focus is automatic and efficient, stratigically directed to those areas of the store that give me instant gratification. Gods forbid anyone who is in my way.

I head first to the science magazine section and peruse my favored magazines, New Scientist, SEED and American Scientist. Scanning the covers, one or two seem to magically appear in one hand before I move on. The first two are unquestionably worth perusing, even though I subscribe to the first. Odd that; the current issue adorns the store racks sometimes days before mine arrives in my departmental mail box.

Next, on to the motorcycle magazines. This is a hunting activity for they are rarely grouped by category of bikes or riding. Considering the variety of publication releases, from monthly, bimonthly to quarterly, finding good reading material has become a game of hide-and-seek and "What's on the stand today?" or "Where the hell is it now?". This time, I chose a British bike rag on the advice of a fellow adventure rider:

"If you really want to learn about the bike world, read the European rags. Bikes and riding are a way of life there. Here, bikes are recreation and show."

He's right. The real 'meat' of riding motorcycles is in Europe and Asia. Bikes and scooters are often the sole transportation of many people there. Riding for sport and pleasure is a close second. It's a very different perspective and grasp of being mobile there. It makes me wish I could live and move amongst them.

After plucking one, two motocycle magazines, I turn on my heel and head out of the magazine racks, glancing at the woodworking and homebuilding rags. Ah, the latest issue of Fine Homebuilding. Instantly plucking that issue, I round the corner and head into the cafe. Nodding a "Hello" at the clerk behind the counter and finding a table near the windows, I stack the magazines in the order of interest for the evening: homebuilding at the bottom, two science rags, a Texas riding issue, and the British bike rag on top. After spending an entire day entrenched in science, including reading papers on the train home, I crave a brief respite.

Returning to my table with a sandwich and a tall ice tea, I eat slowly and look around me. Two tables are occupied by women: two girls of college freshman age at one, two middle-aged women at the other. The two younger girls are chit chatting, leafing through celebrity rags with pictures of glamor men and women adorning the slick colored pages. They appear to be critiquing them judging from their fingers pointing at the figures on pages. I reminds me of the plastic paper people with stick-on and take-off clothes that kids play with.

The two older women are reading Cosmos, Home Journal and Good Housekeeping. Pages filled with "How to lose that fat butt in 6 days" or "How to keep the sex alive in your marriage", interspersed with magical decorations for home, husband and family. Here, cut this out and hang it on your wall and your life will be fulfilled and happy. All this interspersed with an hour-long discussion on what color to paint the dining room, who to hire to mow the lawn, and "Oh, by the way, did you hear about Isabel......"

I can't help but notice that I'm shaking my head, not understanding how such things can captivate their attention and time and grateful that my life is empty of similar occupations that could be better utilized contemplating Stephen Hawking's recent proclamation of multi-universes and reality existing in the eye's of the beholder. Or the many roads I want to travel on my bike.

I look down at my own table and I see magazines that reflect a very different pool of interest and past time than these other women. And I wonder how I ended up so different from others of my own gender. Yet quite satisfied with who I am.

In the line to pay, an older black man behind me strikes up a conversation:

"You know, in a moment, this moment will be gone. Forever gone."

After a moment's thought, I reply "Yes, but then there will be a new moment to replace the one that is gone."

[nodding] Mmhmm.... That is right. And then another moment will replace that one, too."

"Yes, and then another and another. And all those moments replaced will be memories."

"Yessah, and some of those memories may stay, some may be lost. "

"Very true. >And new ones will appear to replace those lost."

"Mmmhmm. Now I wonder if you will remember this conversation after several moments."

Smiling broadly, I reply, "Yes, sir. I will remember this conversation in several moments and for many more after that. And remember this: 'No matter where you go, there you are'."

"Hmm... yes, I like that. Well, young lady, you have a good evening. Yes, I like that...."


Now where else can you go and talk metaphysics to strangers but in a bookstore?





Monday, May 01, 2006

Battles

"When a shepherd goes to kill a wolf, and takes his dog to see the sport, he should take care to avoid mistakes. The dog has certain relationships to the wolf the shepherd may have forgotten."
- Robert Pirsig, Zen and the Art of Motorcycle Maintenance

Thursday, April 27, 2006

We Are All Monkeys

Or more accurately, apes.

One of the most brilliant media commentaries on just who we really are: The Monkeys
..... are us.

"Attention! There are monkey boys in the facility!!"
(anyone know this movie reference? )

Tuesday, April 25, 2006

In the Age of Politically Correct

I watched with trepidation this Age blossom and pollinate over the last twenty-plus years. Now its seeds are growing all over the world. In several places, it has become a noxious weed.

Even the term ‘Politically Correct’ has been deemed politically incorrect. It’s “offensive’. I still haven’t quite determined who is offended by it and why. But I am astute enough to note the furrowed eyebrows and tight lips when it is mentioned.

Mick Hume, an editor of spiked online of the UK, aptly coined it “The Age of Intolerant Tolerance”.

“The pattern goes like this. Tony Blair says that we have to meet the extremist threat by 'championing our values of freedom, tolerance and respect for others'. Then his ministers announce new plans to criminalise 'indirect incitement' of terrorism, along with tougher proposals to outlaw 'incitement to religious hatred'.

The government must have a different dictionary than I do. Mine defines tolerance as 'broad-mindedness' or 'permitting free expression of views one does not share'. In the Whitehall Newspeak edition, however, tolerance appears to mean the opposite. In order to defend our tolerant society we apparently have to ban views that most people do not share. Welcome to the age of intolerant tolerance.”

Hume’s new label is apposite for this growing weed. The UK is not the only fertile soil for its growth. Pervasive here in the US, it permeates through every faction of our society, even in science. And our government condones or secretively encourages it, as long as it is to their advantage.

How do we turn the tide? Start with yourself, your neighbors, coworkers, friends, newspapers, local societies and committees. Start with the grass roots. Prolific, strong and healthy grass eventually chokes weeds which dwindle down to form a balanced ecology. And the pasture thrives.

“We need to tolerate the 'free expression of views one does not share', in order that we can sort out the truth in the open, instead of trying to bury difficult issues beneath a pile of bans. Let everybody freely express their views - and let us all have the freedom ruthlessly to question, criticise and interrogate everything that is said, about everything from religion to race, from suicide bombings to British values. Now more than ever we need freedom of speech for a frank and 'broad-minded' debate about the sort of society we live in and where it is heading.”


Reiterating a quote from Voltaire:

“'Think for yourselves, and let others enjoy the privilege of doing so too.”

Too bad we have forgotten how to think for ourselves.

If I were Head of State.......

  1. Everyone would be permitted to voice their opinions. That’s what they are: opinions. If they offend you, debate them intelligently, learn to filter them, or pull your head into your shell.
  2. Everyone will have the right to make wrong decisions. Learn from the consequences. Or be eliminated from the gene pool.
  3. Everyone is not created equal. We are not clones. Deal with it.
  4. There will be more than two political parties. There are more than two ideologies; let’s have better representation.
  5. All science funding will be deposited into a central fund and disseminated based upon merit, not on sexy biotechnology. The Good Ole’ Boy’s Club will be replaced by representatives from qualifying committees and societies.
  6. Science journal impact factors will be negative numbers only.
  7. Birth control will be distributed free and without discrimination.
  8. A Stupidity Test will be a mandatory component of marriage licenses. Applicants that fail will be required to complete a high school diploma and classes in “How to Be a Functioning and Responsible Human Being” before reapplying.
  9. A requirement of living with a potential spouse for two years must be satisfactorily fulfilled before applying for a marriage license. Applicants must also prove an established household income.
  10. Separation between religion and state will be strictly enforced. There is no debate.
  11. I reserve the right to add more to this list.

Monday, April 24, 2006

Natural

Ending yesterday's ride, I rode up the ramp on Red into the shop, turned off the engine and sat in the saddle for a long moment.

Removing my helmet, I told my friend Chris that I find more and more as I ride that I don't want to get off. His smiling eyes and face reflected a knowing understanding.

While reading* on the train this morning, I came across a passage that explains it all:

"Being on the machine seems more natural than being off it."

Zen and the Art of Motorcycle Maintenance,
by Robert Persig.

Thursday, April 20, 2006

Ghost Riders in the Sky

Nothing is as impressive and electrifying as, well, a Texas electrical storm. Lightening between the clouds on the horizon teases with a hint of impending powerful elements or titillates the visual senses with a tame lightshow. Close observation of the swiftly moving clouds may reveal the direction of the storm, but they can deceive as well as promise. Winds can suddenly shift, temperatures plummet, and barometric pressure swing wildly as a storm passes near or approaches.

I awoke in the middle of the night to a strong palpable smell of moisture and earth in the air. Arising from bed I watched lightening dance between the blue-black clouds in the northwest horizon. The still air and the haunting contrast of darkness blanketing the ground with the subtle flickering of light in the clouds presented a surreal world around me. Silence betrayed the distance of the storm and I returned to my slumber.

I was awoken again later in the night by a furtive wind, sneaking through the open windows and rustling the curtains. Lying in bed I pondered if my guest was an edge of the storm passing by or a harbinger of elemental fury. As if deliberately answering my questions, sudden gusts of wind shook the house and whipped through the windows. Anything light enough in the house and in the wind’s path scattered the floor like fallen soldiers beset by an army of omnipotent invisible beings.

Jumping from my warm bed, I was greeted by relentless and imbricating lightening and thunder, the light flashing all around me like strobe lights. Streaks of lightening seared through my vision, superimposed on the ground and the sky as if they were umbilical cords. I struggled against the wind to close the windows in the direct line of assault, leaving the opposite windows open to delight in the elemental fury upon me.

Standing in the middle of the house with the onslaught and fury of wind, rain, thunder and lightening surrounding me, electricity crept up my body, my skin tingled, my heart pounded harder with every close clap of thunder. Lightening strikes were close enough to deliver a luminance brighter than daylight albeit in a fraction of time and space. I felt like an immortal in a vortex of Nature’s chaos as the elements engulfed my senses.

As quickly as it descended, the storm passed me by. A gentle cleansing rain was left behind to clear the air and quiet the senses and heart. With a rhythmic and soft pattering on the windows and roof, I returned to a deep sleep and dreams.

Sure enough, Nature’s wild horses left me a reminder of their presence in the morning. I suspected during the night several strikes of lightening were close. Sure enough, the circuit board in my truck was blown.

Ah well. Horses leave behind roadside apples. Wild horses riding on the storm can leave behind mementos, too. Shit happens.

Wednesday, April 19, 2006

Buttology

First Scatology, now Buttology.
What's next? Penisology? Hmm......

Rear Admirable
David Holmes, a psychologist at Manchester Metropolitan University, insists that a good bum is key to attractiveness, and he's devised a formula that describes the ideal female buttocks. According to Holmes, maximizing (S + C) x (B + F)/T - V makes for gluteal greatness. S is overall shape of the bottom, C is circularity (how spherical the butt is), B is resilience to bouncing and wobbling, F is touch firmness, T is skin texture and V is the vertical ratio or "pertness." Holmes added that a hip to waist ratio—waist size divided by hip size—of 0.7 is ideal for framing a woman's posterior.

Holmes found the formula by getting 2,000 British women to rate their own bottoms. In the shape category, those with a "trodden doughnut" got only one point, whereas those with a "small peach" scored the maximum five points. After compiling all the factors, a total of 80 points was labeled "perfection," whereas booties earning fewer than zero points were told to "stay indoors." But don't fear, saggy bottom girls, Holmes writes, "Failing all else, confidence and good conversation can sometimes distract attention, if not compensate for a 'bum deal' in the buttock lottery."

"Borrowed" from online Seed Magazine, New and Notable

The Honesty Meme

I came across a passage in Zen and the Art of Motorcycle Maintenance by Robert Pirsig that was an echo from my own past.

A brief converstaion between Pirsig's son, Chris, and he:
"Dad?"

"What?"

"What should I be when I grow up?"

I don't know what to say. "Honest," I finally say.

I recall asking my father the same question. I clearly remember his response:
"Whatever you want to do, whatever you want to be. But always be honest to yourself and to others."

I've tried hard to do just that, Dad. I've changed my mind a few times, but at least I'm honest about that.

If my daughter reads this, I want to tell her the same: always be honest with yourself and with others. And follow the path that has heart.

Tuesday, April 18, 2006

"Paranoia strikes deep.......

.....into your heart it will creep. Starts when you're always afraid. Step out of line, the Man comes and takes you away."

A flashback from the '60's. Yet history has a nasty habit of repeating itself.

The event of 911 evoked a rekindling of community, cooperation, altruism and cohesiveness amongst not only a city but a nation. It even expanded globally.

For a short time.

Then we 'reacted'. Since then, our country has degenerated into a nation of paranoia and fear in the guise of 'patriotism' and 'right'. Without an honest definition of each. In essence, the terrorists were successful. Look around you; read the papers, watch television, watch and talk to people. We are all afraid of ghosts. Mostly our own.

I mourn what we have lost, what we have become and what we could be.

The following is a small example that trickles down like acid rain on marble:
As a researcher in the medical field, disposable sterile scalpels are used in our labs for grossing tissues. I called to order a box of disposable scalpels from one of the largest scientific vendors in the country that has supplied most of the medical research and hospital labs here for years. Their reputation is impeccable.

I was informed that they were suddenly prohibited from shipping disposable scalpels by the federal government. They were waiting for 'approval' and I was encouraged to call back in 7-10 days. Two weeks later when I called to place the order, I was informed that the responsible federal bureau still had not released an 'approval' to ship disposable scalpels. With detectable frustration and apologies, they could offer no prediction of when that approval would be forthcoming.

I called another vendor that sells and ships medical supplies and was greeted with the same scenario.

We have become a nation of fear. We are afraid of ourselves.
We see ghosts and they don't even know they are ghosts.

Mad Scientists and Coffee

Early (very early) morning coffee with a few colleagues in the departmental office can be enlightening. We pondered several hypotheses of the origins and transmission of prion diseases (also known as transmissible spongiform encephalopathies (TSEs) for you pathologists) and how we can use that to control the deer overpopulation. We hypothesized that if deer cannibalize themselves a form of deer 'kuru' and chronic wasting disease (also associated with prions) would restore a population balance.

Tangenting into predictions of what life form will exist the longest on this planet, I posited that microbes will sit in their little habitats giggling at the extinction of the Big Two-appendaged Macrobes. Face it: humans are built 'wrong'. We don't excel at anything, but we are good, albeit slow, adaptionists. Regardless, we can't mutate fast enough to our own self-induced evolving habitat. Nor do we seem capable of seeing that we are destroying everything that gives us life on this planet. Perhaps our species will succumb to the same basic premise of habitat overpopulation dynamics and we will eat each other and die from kuru like the deer (anyone remember the movie Soylent Green?)

Contemplating the ultimate cure for all pathogenic illnesses, we narrowed it down to mucus membranes. Most pathogens gain passive entry into our body via our mucus membranes: our gut, mouth and nose. It provides moisture, nutrients, and an ideal cradle to multiply. Thus, we posited, if we don't eat, drink or breathe, we won't have to worry about getting sick! It is logical.

However, like good scientists, we need to test the hypothesis. We need more data. Our methodology is simple and falls within a NIH budget: duct tape. Now getting it beyond the ethics committee may be a problem.

Ah, the challenges of being a scientist......

Saturday, April 15, 2006

My Zen of Motorcycle Riding

I have a motorcycle. I like to ride it. It takes me places in a way nothing else can, except for my horse. But my horse is getting old (like me), we can’t ride on public roads and he can’t travel as fast as a motorcycle. Similar to riding a horse, riding a bike is all about the journey; the destination is only one part of the whole. I often find that once I’m ‘there’, I want to get back on again and go.

Horses have names, so does my bike: Red (Red Sonja). Just as every horse has the same basic anatomy, and motorcycles share similar mechanical concepts (power system, function, etc), they all express an individual personality. Red and I are becoming well acquainted; I learn something new about it and myself every time I ride. We both have personalities and I am still learning to mesh mine with Red’s. Every time I add or change something on Red, we go through another meshing.

After the first few times I rode Red, I realized this is not just a machine. Well, rationally, it is a machine, in that it has moving parts, burns combustible fuel and expels waste; it gets hot and cold, and something occasionally breaks that needs repair or replacing. But to really ‘know’ my bike, to truly become ‘one’ together, I have to learn how all the parts of the bike work in synchrony just like my own body. I realized at some point in time I would need to learn how to maintain and fix things myself. Moreso, I want to fix things myself. I have to learn how, what and why. Like knowing anything else, it’s a process.

I posed a question to an online motorcycle group on which I participate and it generated slight confusion. I received answers that created more questions, and even more answers. But that’s the process of learning about anything. Rather than knowing only the effect, I want to learn the cause(s) as well. Invariably, peeling away one component reveals another, and on and on until a system is pieced together. In reality, there is usually more than just one answer, more than one way to go from point A to B.

Now, I approach this endeavor the same way I do working with biological questions. Identify the components and their functions. Examine all the small parts at the molecular level. Sort them according to function and location, and ask how they interact with each other, either top down or bottom up. Then ask how that system and its components, interact with other components outside that system. This is the “system” comprised of sub-systems. How they all work together is like a symphony. When all the instruments are tuned and their sounds mesh, you hear and feel beautiful music: it’s ‘right’.

My question to the group was: how does wind affect gas mileage? Realizing that it was a complex question and there would be several answers, sure enough many factors affect gas mileage. The style in which one rides, the intrinsic components of the bike (engine, transmission, power, fairings, etc), and environmental elements. I targeted one element: how does altitude affect engine performance? Of course, what I was asking was a physics-based question (ultimately everything is reduced to physics). So I learned about air density, humidity, temperature, fuel ratios and altitude.

Regardless, all of these factors influence gas mileage: Wind, altitude, gas octane, engine components, bike design, road surface, temperature, style of driving (e.g. commuting versus long-distance open road). And experience. I explained to my fellow riders that as a novice and a scientist, I want, no, need to know the concepts, the fundamental theories of parts, how they work alone and in synchrony, and why. Then I can add my empirical data, experience on the bike under different conditions, to the basic fundamental knowledge and concepts, and ultimately I am able to alter the behaviour of the bike and my riding.

Being aware of all of these components when you ride allows you to feel all of it in synchrony: the wind, temperature, altitude, fuel combustion, speed, road surface, and so much more. But rather than be overwhelming, it all becomes a part of you and your bike together. Does it detract from the beauty and enjoyment of riding a bike? Only if you let it. On the contrary, it can enhance the sensation and pleasure of riding. Your bike becomes more a part of you and you a part of your bike.

It is my ‘zen’ of riding.

Thursday, April 13, 2006

Walkabout

The truth knocks on the door and you say, “Go away, I’m looking for the truth,” and so it goes away. Puzzling. – Robert Pirsig*

Time for a Walkabout

Every so often we need a change. We become so caught up in our own small box of existence, hurrying most of our time away, losing grasp of what is important to each and all of us. We repeat the same day-to-day routine, a monotony that becomes shallow yet comfortable for most. It’s as if we become robots on automatic pilot. Then at some point in our lives we wonder where all that time went and sorry that it is all gone. We can’t go back to regain it.

Familiarity is comfort to most; it is ‘safe’, reassuring and relatively risk-free. We tend to shy away from risk and strangeness. Yet the world is full of wonderful strangeness. And what makes this world so hard to see is its usualness. Familiarity can blind you, too.

We accumulate new information and experiences every day, sometimes it is overwhelming. Our perspective tends to become more narrow and smaller housed inside our little box of comfort. We become the center of the cosmos and familiarity shrink wraps us inside the nucleus of our own ego. Our ‘I’ is a small parasitic microbe that only moves to provide for our immediate physiological and psychological needs. In time we become bored with our own little box and find ways to fill the empty spaces as we implode inside ourselves. We become disconnected with others and our environment until the robot is nudged out of autopilot. And malfunctions. We become dehumanized.

Robert Pirsig wrote*:

You see things vacationing on a motorcycle in a way that is completely different from any other. In a car you're always in a compartment, and because you're used to it you don't realize that through that car window everything you see is just more TV. You're a passive observer and it is all moving by you boringly in a frame…… On a cycle the frame is gone. You are completely in contact with it all. You are ‘in’ the scene, not just watching it anymore, and the sense of presence is overwhelming.

Metaphorically our lives become like the compartment of a car: the passive observer, too busy to talk to each other, passing life by outside without really touching it, experiencing it. By the time we stop to look back and wonder where it went, it’s too late. This is a dead end.

The Australian adolescent aborigines (and many other indigenous peoples) go walkabout for weeks or months as a rite of passage. I often refer to go walkabout when I travel without a planned itinerary or even destination. It is all about the journey, not the destination.

When the spirit falters, when we find ourselves questioning, confused, or need to break the cycle of familiarity, go on a walkabout. At times I use a walkabout to break the distractions of my ‘box’ of life, or when life throws me a curve ball that hits me square in the heart. Sometimes the surroundings of silence and space allow me to hold and direct the construction of my thoughts. Other times it is the strangeness of the environment and the people that break down the walls of my box and allow me to expand outside again, refreshing my perspective.

Invariably, walkabouts give me the clearness and fortitude to open the door when Truth comes knocking.

* Zen and the Art of Motorcycle Maintenance. By Robert Pirsig.

Thursday, April 06, 2006

Mounting Evidence for the Noodly Appendage of Flying Spaghetti Monster

Debate continues on the validity of God, Flying Spaghetti Monster, Intelligent Design, and non-belief.

Evidence for the existence of Flying Spaghetti Monster, or beings created in his image, were discovered last year. Long noodles were found under ten feet of sediment during an archeological dig in NW China. The noodles are believed to be 4,000 years old.

Are these ancient noodles the ancestors of our modern noodles? The biological composition of the 4,000-year-old noodles suggests that modern noodles evolved over time and perhaps China was the epicenter of their origin. Was the creation of these noodles spontaneous or do they also have a predecessor? Perhaps they were created in the image of the divine Noodly Appendage or serve as an example of spontaneous creation.

Additional evidence is needed to prove that the noodles found at Lajia are the ancestor of either Asian noodles or Italian pasta. "But in any case, the latter is only documented two millennia later," Lu said.

Combined with this discovery, additional research presents empirical evidence in support of Flying Spaghetti Monsterism. Researchers report spontaneous generation of a new species of pasta: Noodleus doubleaous. In lieu of an acceptable explanation, the authors conclude that observed results were guided by the hand of an intelligent designer.

Doubters may refer to their popular Belief-o-matic for consultation on their Belief du Jour in this matter.

Tuesday, April 04, 2006

Miss Information

If we reduce life, and nearly everything in existence, to the most common denominator, what do we have?
Information.

DNA information is transmitted through RNA, transferred to ..........proteins......cell signaling.....adaptation..... on and on. Read a paper, watch TV, bombardment by your fellow Infomation Perpetuators; we are all information carriers and transmitters. Some should be eliminated from the Information Pool.

There are many genres and species of Information. Even genders.

In today's world of modern technology and its ability to rapidly propagate, we have a skewed gender population of Infomation: Miss Information.

When Miss Information rolls down hill, she balloons, sprays everywhere and the repercussions extend exponentially.

Here is a critique of Miss Information dressed innocently as 'education.'

"How stuff doesn't work"

Pharyngula, the mind of PZ Myers.

Saturday, April 01, 2006

April's Fool Day

I woke up this morning with a warm naked body next.....

Oh wait, that was a dream.

Got out of bed greeted by humid warm air blowing through all the window curtains, chirping birds outside the windows, the smell of moist Texas air. The sun hiding above the laden fog and clouds with a hint of later sunshine and heat. Wear a tank top under the jacket today; it's going to be a humid toaster.

The smell of freshly made coffee mixes with the moist breeze in the house and I see my horse outside grazing, stark black against the blended green and brown terrain. The barn roof drips condensation which the ground absorbs quickly. The cows next door meander contentedly.

After throwing water on my face and donning top and pants, I gather a change of clothes, shampoo and toothpaste, top my thermal mug with coffee, and pack the laptop accessories into the padded backpack. We've got miles and miles and days away ahead of us.

Grab the keys on the way out the door and greet the silver FJR waiting outside under cover like a trusty steed waiting for its master. Checking it over, stuffing the hardbags, and strapping the backpack onto the back rack, my leg swings over to straddle the seat. Sitting down in that comfortable sheepkin-cushioned saddle, shift into neutral, turn the key and push the start button. The sound that makes you go hummmmm.....

Sit for a while enjoying the peace and quiet while the Silverado between my legs warms to a purring idle. Smiling, the jacket is zipped up, the helmet is on and strapped, gloves envelope my hands and we ready to roll. Right the bike, push up the kickstand, shift down and roll the throttle. We're off.

Taking the country road curves slowly this morning, making our way to the highway heading south. Got a long day with ribbons of road ahead. No need to push it until the urge arises to crank the throttle open for a gazelle-like sprint. No cars in sight, no lights, no horns. Only the open road ahead and behind, going somewhere through space and time. Right now, there's only me and my steed. And right now, that's all that I need.

April Fool's Day and wishful thinking.

For those who can, have a good safe ride today.